Data input
Column
BayesTraits Header
Column
Restrictions
Reconstructions / Fossilisations
No tags or reconstructions setPriors
Tree
MCMC traces
Column
ML Chain
Column
ML Chain Density
ML Chain Violins
MCMC Diagnostics
Column
Effective Sampling Sizes
Mean Acceptance Rates
Total Average Acceptance Rates
Column
Maximum Likelohood Autocorrelation
Root State & Rate Estimates
Row
Root State
Root state probabilities for each run
Transition Rates Network
Row
Transition Rates Densities
Density distributions of rate transition estimates. Line show mean rates.
Node Reconstructions
No nodes were set for ancestral state reconstrucitionsColumn
Node Reconstruction / Fossilisation
No nodes were set for ancestral state reconstrucitionsColumn
Phylogeny
RevJ Model Reduction
Row
Reverse Jump Model Sampling
Reverse Jump Model Ranking - Table
Reverse Jump Model Ranking - Barchart
Row
% Non-zero transitions
Three most frequently sampled model
edge numbers show transition rates
Model Comparison - LogBF
Column
Stepping Stone Sampler
No stepping stones sampler setLog Marginal Likelihood
No stepping stones sampler setLog Bayes Factor
No stepping stones sampler setColumn
Stone Power
No stepping stones sampler setStone Marginal Likelihood
No stepping stones sampler setRunning Marginal Likelihood
No stepping stones sampler set